Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ISM_06490Translocase. (330 aa)    
Predicted Functional Partners:
ISM_07940
Membrane protein, putative.
  
     0.760
ISM_06485
OmpA domain protein; COG0226 ABC-type phosphate transport system, periplasmic component.
 
     0.754
ISM_15780
Hypothetical protein.
  
     0.743
ISM_15925
Hypothetical protein.
  
     0.731
ISM_07200
Hypothetical protein.
  
     0.711
ISM_09596
Hypothetical protein; COG1204 Superfamily II helicase.
  
     0.688
ISM_05110
isoleucyl-tRNA synthetase.
  
     0.685
ISM_12440
Lipoprotein, putative.
  
     0.663
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
     0.662
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
       0.652
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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