Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_06550Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators. (148 aa)    
Predicted Functional Partners:
ISM_06560
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
     
 0.850
ISM_06555
Hydrolase, carbon-nitrogen family protein; COG0388 Predicted amidohydrolase.
       0.803
ISM_06565
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
  
    0.791
ISM_06570
COG0500 SAM-dependent methyltransferases.
       0.624
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.557
ISM_03425
Hypothetical protein.
  
     0.551
ISM_09646
Trypsin domain protein; COG5640 Secreted trypsin-like serine protease.
  
    0.466
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.446
ISM_13195
Hypothetical protein.
  
     0.440
ISM_09806
Hypothetical protein.
  
     0.436
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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