STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06565Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases. (195 aa)    
Predicted Functional Partners:
ISM_06480
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
 
    0.961
ISM_03140
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.931
ISM_06560
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
 
     0.813
ISM_06550
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
    0.804
ISM_10021
Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.
 
  
 0.791
ISM_14760
Competence protein; COG0658 Predicted membrane metal-binding protein.
 
  
 0.771
ISM_02505
COG0287 Prephenate dehydrogenase.
   
  
 0.762
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.745
ISM_06555
Hydrolase, carbon-nitrogen family protein; COG0388 Predicted amidohydrolase.
     
 0.726
ISM_13150
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
    0.702
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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