Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06580Hypothetical protein. (62 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.644
ISM_16150
Hypothetical protein.
  
     0.621
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination.
  
    0.602
ISM_14675
Hypothetical protein.
  
     0.568
ISM_17195
Hypothetical protein.
  
     0.561
bamA
Outer membrane protein, OMP85 family protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.555
ISM_08550
Hypothetical protein.
  
     0.531
ISM_03305
tonB domain protein, putative.
  
   
 0.526
ISM_06585
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein; COG1376 Uncharacterized protein conserved in bacteria.
       0.509
ISM_11565
AsmA family protein; COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
   
 0.506
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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