Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ISM_06590Lipoprotein, putative; COG2340 Uncharacterized protein with SCP/PR1 domains. (148 aa)    
Predicted Functional Partners:
ISM_06585
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein; COG1376 Uncharacterized protein conserved in bacteria.
 
   
 0.719
ISM_01235
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.595
ISM_04055
ABC transporter permease protein; COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.595
ISM_05440
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.595
ISM_05475
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.595
ISM_05890
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.595
ISM_05995
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
    
   0.595
ISM_06050
Hypothetical protein.
  
    0.580
ISM_13355
Hypothetical protein.
  
    0.580
ISM_14155
Class II aldolase/adducin N-terminal domain protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
    
   0.565
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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