Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ISM_06785Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria. (214 aa)    
Predicted Functional Partners:
ISM_06795
Smr domain protein; COG2840 Uncharacterized protein conserved in bacteria.
 
     0.870
ISM_06790
MltA/3D domain protein; COG2821 Membrane-bound lytic murein transglycosylase.
       0.845
ISM_12070
COG3820 Uncharacterized protein conserved in bacteria.
  
     0.771
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.770
ISM_12425
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.743
ISM_00345
DnaJ domain protein; COG2214 DnaJ-class molecular chaperone.
  
     0.706
ISM_11115
Hypothetical protein.
  
     0.704
ISM_06780
FxsA; COG3030 Protein affecting phage T7 exclusion by the F plasmid.
       0.682
atpF
ATP synthase F0, B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.675
ISM_14545
Disulfide bond formation protein, DsbB family protein.
  
     0.666
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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