STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06900COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. (236 aa)    
Predicted Functional Partners:
ISM_06895
COG2515 1-aminocyclopropane-1-carboxylate deaminase.
       0.773
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.681
ISM_06905
Beta-ketothiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.576
ISM_06890
Hypothetical protein.
       0.501
ISM_05375
osmC-like family protein; COG1073 Hydrolases of the alpha/beta superfamily.
    
  0.449
ISM_05840
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
    
 0.444
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
  
  0.433
ISM_11795
Riboflavin biosynthesis protein RibF; COG0196 FAD synthase; Belongs to the ribF family.
    
 0.427
gpsA
COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.426
ISM_10675
Decarboxylase family protein; COG1611 Predicted Rossmann fold nucleotide-binding protein.
 
  
  0.418
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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