STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_06975Hypothetical protein. (203 aa)    
Predicted Functional Partners:
ISM_06970
Exonuclease, putative; COG0349 Ribonuclease D.
       0.849
ISM_06980
COG1934 Uncharacterized protein conserved in bacteria.
 
   
 0.762
ISM_16370
Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
  
     0.720
ISM_06985
ABC transporter, ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
       0.707
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.690
ISM_02270
Lipoprotein, putative.
  
     0.678
ISM_15175
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.650
ISM_03485
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.628
ISM_17125
COG0795 Predicted permeases.
  
   
 0.573
ISM_09601
Hypothetical protein.
  
     0.565
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.