STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07010Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis. (328 aa)    
Predicted Functional Partners:
ISM_07005
core-2/I-branching enzyme family protein.
 
   
 0.951
ISM_07000
Hypothetical protein.
 
     0.943
ISM_10211
Hypothetical protein.
 
 
 0.837
ISM_07040
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.832
ISM_16975
Hypothetical protein; COG0400 Predicted esterase.
  
 
   0.793
ISM_16730
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
 
 0.786
ISM_13045
COG3562 Capsule polysaccharide export protein.
 
   
 0.775
ISM_02810
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family protein; COG3524 Capsule polysaccharide export protein.
 
    0.773
ISM_02805
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.770
ISM_06045
Hypothetical protein.
  
     0.770
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.