STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07205Hypothetical protein. (77 aa)    
Predicted Functional Partners:
ISM_07200
Hypothetical protein.
 
     0.941
ISM_07210
Hypothetical protein.
       0.620
ISM_12180
Tellurite resistance protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.576
ISM_06490
Translocase.
  
     0.572
ISM_05110
isoleucyl-tRNA synthetase.
  
    0.542
ISM_02610
Hypothetical protein.
  
     0.502
ISM_06470
Hypothetical protein; COG3734 2-keto-3-deoxy-galactonokinase.
  
     0.498
ISM_00535
Hypothetical protein.
  
     0.439
ISM_14400
Hypothetical protein; COG1154 Deoxyxylulose-5-phosphate synthase.
  
     0.416
ISM_12440
Lipoprotein, putative.
  
     0.415
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.