STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07285Fatty acid desaturase family protein. (377 aa)    
Predicted Functional Partners:
ISM_06035
Alkane-1 monooxygenase, putative.
  
  
 
0.873
ISM_02320
Glutathione-dependent formaldehyde dehydrogenase; COG1062 Zn-dependent alcohol dehydrogenases, class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
     
 0.773
ISM_09180
COG1012 NAD-dependent aldehyde dehydrogenases.
     
  0.773
ISM_12055
COG1012 NAD-dependent aldehyde dehydrogenases.
     
  0.773
ISM_16970
COG2124 Cytochrome P450.
 
  
 0.762
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
 0.732
ISM_16975
Hypothetical protein; COG0400 Predicted esterase.
  
     0.726
ISM_07290
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.694
ISM_14410
Hypothetical protein.
  
     0.656
ISM_07010
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.632
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.