STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07295Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives. (168 aa)    
Predicted Functional Partners:
ISM_07300
Thiol:disulfide interchange protein, DsbA family protein; COG1651 Protein-disulfide isomerase.
 
     0.848
ISM_07305
COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
       0.761
ISM_07290
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.709
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.663
ISM_16370
Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
  
     0.613
ISM_05580
Hypothetical protein.
  
     0.594
ISM_15175
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.593
ISM_00345
DnaJ domain protein; COG2214 DnaJ-class molecular chaperone.
  
     0.577
ISM_09996
Hypothetical protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.568
ISM_09396
Hypothetical protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase.
  
     0.565
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.