Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_07360COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. (264 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.681
ISM_07365
Nidogen, extracellular region; COG2931 RTX toxins and related Ca2+-binding proteins.
    
 0.604
ISM_07410
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
    0.488
ISM_07370
Mannuronan C-5-epimerase, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
    
 0.476
ISM_05375
osmC-like family protein; COG1073 Hydrolases of the alpha/beta superfamily.
    
  0.449
ISM_05840
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
    
 0.444
ISM_11795
Riboflavin biosynthesis protein RibF; COG0196 FAD synthase; Belongs to the ribF family.
    
 0.427
gpsA
COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.426
ISM_10216
Kinase, pfkB family protein; COG0524 Sugar kinases, ribokinase family.
 
  
  0.418
ISM_04680
COG2365 Protein tyrosine/serine phosphatase.
    
  0.417
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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