Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_07370Mannuronan C-5-epimerase, putative; COG2931 RTX toxins and related Ca2+-binding proteins. (493 aa)    
Predicted Functional Partners:
ISM_07365
Nidogen, extracellular region; COG2931 RTX toxins and related Ca2+-binding proteins.
     0.870
ISM_02030
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
    
0.851
ISM_14560
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  0.846
ISM_06395
Type I secretion target repeat protein.
 
     0.817
ISM_11725
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.750
ISM_14555
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.744
ISM_07385
COG3524 Capsule polysaccharide export protein.
 
     0.699
ISM_07405
Hypothetical protein.
 
 
   0.675
ISM_08270
Calcium binding hemolysin protein, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.659
ISM_07390
Putative cell surface polysaccharide export ABC-2 transporter permease protein; wzm1Y20833; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
     0.635
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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