Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_07440Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease. (223 aa)    
Predicted Functional Partners:
ISM_07445
Hypothetical protein; Belongs to the UPF0434 family.
       0.845
ISM_07435
COG3118 Thioredoxin domain-containing protein.
 
   
 0.835
ISM_07430
Exodeoxyribonuclease III, putative; COG0708 Exonuclease III.
       0.641
ISM_10905
CBS domain-containing protein; COG0517 FOG: CBS domain.
   
   0.628
ISM_07450
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.578
ISM_03030
Hypothetical protein; COG0170 Dolichol kinase.
    
   0.525
ISM_09050
Hypothetical protein.
  
 
   0.512
ISM_02865
Probable molybdopterin biosynthesis protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
    
 0.487
ISM_10646
Thiamine biosynthesis protein ThiF; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
    
 0.487
ISM_07425
Putative two-component system sensor histidine kinase; COG2203 FOG: GAF domain.
       0.438
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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