Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07465Hypothetical protein; COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase. (277 aa)    
Predicted Functional Partners:
ISM_07470
Hypothetical protein.
     0.965
ISM_07455
Hypothetical protein.
  
 0.920
ISM_15780
Hypothetical protein.
     0.564
ISM_14360
NADH dehydrogenase subunit I; COG0500 SAM-dependent methyltransferases.
 
     0.563
ISM_07460
Hypothetical protein.
 
     0.552
ISM_07475
COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family.
       0.511
ISM_00750
Lipoprotein, putative.
  
     0.508
ISM_10895
Hypothetical protein.
  
     0.428
ISM_12045
Hypothetical protein.
  
     0.411
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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