STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07475COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family. (504 aa)    
Predicted Functional Partners:
ISM_06105
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 0.983
ISM_06100
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
  
 0.931
ISM_06020
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.894
ISM_12240
Hypothetical protein; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.894
ISM_12680
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.894
ISM_13640
Pyridine nucleotide-disulphide oxidoreductase family protein; COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 0.886
ISM_15335
Glutamine amidotransferase-like protein; COG0067 Glutamate synthase domain 1.
  
  0.817
ISM_16945
Glutamine amidotransferase, class II; COG0067 Glutamate synthase domain 1.
  
  0.817
ISM_15340
GXGXG motif-containing protein; COG0070 Glutamate synthase domain 3.
  
  0.750
ISM_16940
FwdC/FmdC family protein; COG0070 Glutamate synthase domain 3.
  
  0.750
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.