STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07515Transcriptional regulator, GntR family protein; COG2186 Transcriptional regulators. (233 aa)    
Predicted Functional Partners:
ISM_07500
COG3181 Uncharacterized protein conserved in bacteria.
 
     0.626
ISM_04310
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
  
 0.582
ISM_07510
COG3333 Uncharacterized protein conserved in bacteria.
 
     0.563
ISM_03985
Transcriptional regulatory protein; COG1802 Transcriptional regulators.
  
  
 0.553
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.541
ISM_03340
COG1802 Transcriptional regulators.
  
  
 0.499
ISM_07490
Hypothetical protein; COG0684 Demethylmenaquinone methyltransferase.
 
     0.480
ISM_07505
Hypothetical protein.
       0.456
ISM_13290
COG2188 Transcriptional regulators.
  
    0.433
ISM_14055
COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
   0.408
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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