Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_07555TRAG protein; COG3505 Type IV secretory pathway, VirD4 components. (647 aa)    
Predicted Functional Partners:
ISM_17345
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.798
ISM_07560
Hypothetical protein.
       0.773
ISM_17825
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
  
     0.700
ISM_07625
COG4227 Antirestriction protein.
 
    0.679
ISM_07565
Hypothetical protein.
       0.671
ISM_07680
Hypothetical protein.
 
   
 0.630
ISM_17375
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.618
ISM_15670
Phospholipase, patatin-like family protein; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
    
   0.604
ISM_17350
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
 
   
 0.604
ISM_02280
Hypothetical protein; COG1403 Restriction endonuclease.
   
 
 0.594
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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