STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07555TRAG protein; COG3505 Type IV secretory pathway, VirD4 components. (647 aa)    
Predicted Functional Partners:
ISM_17345
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.819
ISM_07560
Hypothetical protein.
       0.773
ISM_17825
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
  
     0.700
ISM_02280
Hypothetical protein; COG1403 Restriction endonuclease.
   
 
 0.699
ISM_10800
HNH endonuclease family protein; COG1403 Restriction endonuclease.
   
 
 0.699
ISM_12750
Hypothetical protein; COG1403 Restriction endonuclease.
   
 
 0.699
ISM_15670
Phospholipase, patatin-like family protein; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
    
   0.678
ISM_07625
COG4227 Antirestriction protein.
 
    0.677
ISM_07565
Hypothetical protein.
       0.671
ISM_17375
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.630
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.