STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07665HipA protein; COG3550 Uncharacterized protein related to capsule biosynthesis enzymes. (436 aa)    
Predicted Functional Partners:
ISM_07670
COG1396 Predicted transcriptional regulators.
 
 
 0.996
ISM_07650
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
 
 0.799
ISM_17305
COG1396 Predicted transcriptional regulators.
 
 
 0.662
ISM_10985
Ribonucleoside-diphosphate reductase, putative; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 
 0.643
ISM_04415
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
 
 0.626
ISM_12675
COG1396 Predicted transcriptional regulators.
  
 
 0.626
ISM_01220
Transcriptional regulator, putative; COG1396 Predicted transcriptional regulators.
  
 
 0.604
ISM_02105
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
 
 0.604
ISM_04490
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
 
 0.604
ISM_08090
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
 
 0.604
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.