STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07685Hypothetical protein. (132 aa)    
Predicted Functional Partners:
ISM_07680
Hypothetical protein.
 
     0.960
ISM_07645
Hypothetical protein.
  
     0.715
ISM_07690
Hypothetical protein.
       0.568
ISM_07555
TRAG protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.476
ISM_07675
Hypothetical protein; COG0509 Glycine cleavage system H protein (lipoate-binding).
       0.464
ISM_07625
COG4227 Antirestriction protein.
  
     0.458
ISM_07665
HipA protein; COG3550 Uncharacterized protein related to capsule biosynthesis enzymes.
 
     0.436
ISM_07670
COG1396 Predicted transcriptional regulators.
 
     0.414
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.