STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07730Azu1 pseudoazurin (blue copper protein); COG3794 Plastocyanin. (140 aa)    
Predicted Functional Partners:
ISM_04420
Selenium-binding protein, putative.
   
   0.919
ISM_04680
COG2365 Protein tyrosine/serine phosphatase.
   
 
 0.899
ISM_14390
COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
    
   0.887
ISM_07745
ABC Fe3+-siderophores transporter, periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
     0.874
ISM_07735
Iron ABC transporter, ATP-binding protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
    0.820
ISM_04155
COG2132 Putative multicopper oxidases.
   
 0.812
ISM_11910
COG2132 Putative multicopper oxidases.
   
 0.812
ISM_17450
Hypothetical protein; COG2132 Putative multicopper oxidases.
   
 0.812
ISM_17515
COG2132 Putative multicopper oxidases.
   
 0.812
ISM_17635
COG2132 Putative multicopper oxidases.
   
 0.812
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.