Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_07785Hypothetical protein; COG3568 Metal-dependent hydrolase. (327 aa)    
Predicted Functional Partners:
ugpE
Hypothetical protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
     0.910
ISM_07770
Hypothetical protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.897
ISM_07765
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.863
ugpC
Hypothetical protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
     0.826
ISM_07310
NifS-related protein; COG0520 Selenocysteine lyase.
    
   0.619
ISM_12170
Aminotransferase, class V; COG0520 Selenocysteine lyase.
    
   0.619
ISM_15955
Cysteine desulfurase SufS; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.619
ISM_13085
Hypothetical protein; COG4286 Uncharacterized conserved protein related to MYG1 family.
  
     0.529
ISM_07695
Hypothetical protein.
  
     0.488
ISM_01540
Phospholipase D/Transphosphatidylase; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
  
 
  0.461
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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