STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_07905Polyamine ABC transporter, permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II. (401 aa)    
Predicted Functional Partners:
ISM_07900
Polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.978
ISM_07890
Polyamine ABC trasnporter, periplasmic polyamine-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
  0.958
potA-6
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
  0.925
ISM_11105
Probable binding protein component of ABC transporter; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
  0.909
ISM_04455
Opine/polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.894
ISM_03795
COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
  0.878
ISM_04450
Putative extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
  0.851
ISM_08040
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.796
ISM_07895
Hypothetical protein.
       0.778
ISM_03970
ABC putrescine transporter, inner membrane subunit; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.767
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.