STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08000Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators. (215 aa)    
Predicted Functional Partners:
ISM_09901
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.771
ISM_03985
Transcriptional regulatory protein; COG1802 Transcriptional regulators.
  
     0.757
ISM_08005
Hypothetical protein; COG1451 Predicted metal-dependent hydrolase.
       0.740
ISM_10296
COG1802 Transcriptional regulators.
  
     0.717
prmC
Modification methylase, HemK family protein; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.551
ISM_08010
Hypothetical protein.
       0.517
ISM_05580
Hypothetical protein.
  
     0.452
ISM_15325
Regulator for uxu operon; COG2186 Transcriptional regulators.
  
  
 0.417
ISM_13645
Pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators.
  
  
 0.414
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.