STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08010Hypothetical protein. (92 aa)    
Predicted Functional Partners:
ISM_08005
Hypothetical protein; COG1451 Predicted metal-dependent hydrolase.
       0.701
ISM_10616
Hypothetical protein.
  
    0.669
ISM_11535
Membrane protein, putative.
  
     0.633
ISM_13150
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
     0.602
ISM_08000
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
       0.517
ISM_08625
Hypothetical protein.
  
     0.505
ISM_04675
Hypothetical protein.
  
     0.504
ISM_00015
Transcriptional regulator, CarD family protein; COG1329 Transcriptional regulators, similar to M. xanthus CarD.
  
     0.495
ISM_03495
COG1183 Phosphatidylserine synthase.
  
     0.464
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
    0.441
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.