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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08110Hypothetical protein; COG3598 RecA-family ATPase. (392 aa)    
Predicted Functional Partners:
ISM_08115
Hypothetical protein.
       0.773
ISM_12755
Hypothetical protein; COG3747 Phage terminase, small subunit.
 
     0.640
ISM_12765
COG4695 Phage-related protein.
 
     0.620
ISM_12750
Hypothetical protein; COG1403 Restriction endonuclease.
 
   
 0.612
ISM_12760
COG4626 Phage terminase-like protein, large subunit.
 
     0.609
ISM_12775
Putative phage-related protein.
 
     0.601
ISM_12795
Hypothetical protein.
  
     0.566
ISM_07660
TIR.
  
     0.539
ISM_12785
Hypothetical protein.
  
     0.508
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
    
 0.508
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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