STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08175Hypothetical protein. (182 aa)    
Predicted Functional Partners:
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
   
 0.962
ISM_08185
Hypothetical protein.
 
   
 0.961
ISM_08170
Aminomethyltransferase; COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
   
 0.897
ISM_08155
Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
 
   
 0.833
ISM_15390
Putative aminomethyltransferase protein; Belongs to the GcvT family.
 
   
 0.790
ISM_08150
ABC transporter, periplasmic substrate-binding protein, putative; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.789
ISM_04300
Putative aminomethyltransferase protein; Belongs to the GcvT family.
 
   
 0.729
ISM_08145
Transcriptional regulator, GntR family protein; COG2186 Transcriptional regulators.
  
     0.696
ISM_08190
Probable chaperone-like transmembrane protein; COG2076 Membrane transporters of cations and cationic drugs.
       0.687
ISM_08160
Ammonium transporter; COG0004 Ammonia permease.
 
     0.616
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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