Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08185Hypothetical protein. (355 aa)    
Predicted Functional Partners:
ISM_08175
Hypothetical protein.
 
   
 0.962
ISM_08180
Vanillate O-demethylase oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
   
 0.959
ISM_08170
Aminomethyltransferase; COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
   
 0.890
ISM_08155
Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
 
     0.823
ISM_15390
Putative aminomethyltransferase protein; Belongs to the GcvT family.
 
     0.794
ISM_08150
ABC transporter, periplasmic substrate-binding protein, putative; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.770
ISM_04300
Putative aminomethyltransferase protein; Belongs to the GcvT family.
 
     0.748
ISM_08190
Probable chaperone-like transmembrane protein; COG2076 Membrane transporters of cations and cationic drugs.
       0.685
ISM_08160
Ammonium transporter; COG0004 Ammonia permease.
 
     0.635
ISM_16945
Glutamine amidotransferase, class II; COG0067 Glutamate synthase domain 1.
  
     0.618
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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