STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08270Calcium binding hemolysin protein, putative; COG2931 RTX toxins and related Ca2+-binding proteins. (2064 aa)    
Predicted Functional Partners:
ISM_14560
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
  0.884
ISM_02030
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
  
  0.857
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
  0.774
ISM_11725
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.770
ISM_06395
Type I secretion target repeat protein.
  
     0.767
ISM_07365
Nidogen, extracellular region; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.761
ISM_08265
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.740
ISM_14555
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.713
ISM_08260
Type I secretion membrane fusion protein, HlyD family protein; COG0845 Membrane-fusion protein.
 
  
 0.677
ISM_05195
Hypothetical protein.
   
   0.668
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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