STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08295TRAP-T family transporter, fused small and large inner membrane subunit; COG3333 Uncharacterized protein conserved in bacteria. (494 aa)    
Predicted Functional Partners:
ISM_08305
COG3181 Uncharacterized protein conserved in bacteria.
  
 0.939
ISM_03995
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.852
ISM_13325
TRAP-T family transporter, periplasmic binding protein; COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.851
ISM_07500
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.846
ISM_12295
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.836
ISM_08300
COG1272 Predicted membrane protein, hemolysin III homolog.
       0.773
ISM_08290
Transcriptional regulatory protein; COG1609 Transcriptional regulators.
 
     0.605
ISM_08310
COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.576
ISM_08315
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.543
ISM_04000
Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily.
  
 
 0.525
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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