STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08530COG1652 Uncharacterized protein containing LysM domain. (265 aa)    
Predicted Functional Partners:
ISM_14400
Hypothetical protein; COG1154 Deoxyxylulose-5-phosphate synthase.
  
 
   0.676
ISM_15855
Hypothetical protein.
    
   0.632
ISM_08535
folC bifunctional protein; COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
       0.629
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.624
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
   0.602
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.574
ISM_02175
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 
   0.568
ISM_00255
Tryptophan repressor binding protein; COG0655 Multimeric flavodoxin WrbA.
   
  
 0.533
ISM_00630
Hypothetical protein.
    
   0.505
ISM_00635
Type I secretion target repeat protein.
    
   0.505
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.