STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08580Sulfur deprivation response regulator; COG0471 Di- and tricarboxylate transporters. (627 aa)    
Predicted Functional Partners:
ISM_17225
Glutathione-regulated potassium-efflux system protein; COG0475 Kef-type K+ transport systems, membrane components.
  
  
 0.736
cysC
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate.
 
  
 0.602
ISM_08575
L-lactate dehydrogenase, putative; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
  
  
 0.591
ISM_16615
Potassium uptake transporter, NAD-binding subunit, TrkA; COG0569 K+ transport systems, NAD-binding component.
 
  
 0.589
ISM_08585
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
     
 0.510
ISM_06675
Phosphate acetyltransferase; COG0281 Malic enzyme.
  
  
 0.435
ISM_09586
Malate dehydrogenase; COG0281 Malic enzyme.
  
  
 0.435
ISM_08590
ephB, putative; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.401
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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