STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_08995RTX secretion protein D, HlyD family protein; COG0845 Membrane-fusion protein. (448 aa)    
Predicted Functional Partners:
ISM_00695
Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
 0.954
ISM_08990
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.953
ISM_05600
Type I secretion outer membrane protein, TolC family protein; COG1538 Outer membrane protein.
  
 0.826
ISM_00700
COG1538 Outer membrane protein.
  
 0.809
ISM_08265
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.800
ISM_17455
COG1538 Outer membrane protein.
  
 0.796
ISM_17090
Hypothetical protein; COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.795
ISM_02030
Type I secretion target repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  
 0.737
ISM_06395
Type I secretion target repeat protein.
 
  
 0.674
ISM_07365
Nidogen, extracellular region; COG2931 RTX toxins and related Ca2+-binding proteins.
 
  
 0.674
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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