STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09005COG0584 Glycerophosphoryl diester phosphodiesterase. (257 aa)    
Predicted Functional Partners:
ISM_00045
Hydrolase, alpha/beta fold family protein; COG2267 Lysophospholipase.
 
  
 0.875
ISM_09000
Endoribonuclease L-PSP family protein; COG0251 Putative translation initiation inhibitor, yjgF family.
       0.853
ISM_09015
COG2154 Pterin-4a-carbinolamine dehydratase.
   
   0.808
ISM_09010
COG3146 Uncharacterized protein conserved in bacteria.
       0.784
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.768
ISM_10051
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.748
ISM_09411
Hypothetical protein.
  
 
 0.694
ISM_05840
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
  
 0.615
ISM_07910
Alkaline phosphatase, putative; COG3540 Phosphodiesterase/alkaline phosphatase D.
  
 
 0.599
ISM_14205
COG0546 Predicted phosphatases.
 
 
   0.595
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.