STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09045Hypothetical protein. (683 aa)    
Predicted Functional Partners:
ISM_09050
Hypothetical protein.
 
     0.965
ISM_09055
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
     0.964
ISM_09060
ATPase, MoxR family protein; COG0714 MoxR-like ATPases.
 
     0.893
ISM_08625
Hypothetical protein.
  
     0.772
ISM_09065
COG3816 Uncharacterized protein conserved in bacteria.
 
     0.772
ISM_02105
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.683
ISM_09070
Hypothetical protein; COG3622 Hydroxypyruvate isomerase; Belongs to the hyi family.
       0.628
ISM_00035
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.613
ISM_11710
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.507
ISM_02245
COG3786 Uncharacterized protein conserved in bacteria.
  
     0.498
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.