STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09050Hypothetical protein. (917 aa)    
Predicted Functional Partners:
ISM_09055
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.965
ISM_09045
Hypothetical protein.
 
     0.963
ISM_09060
ATPase, MoxR family protein; COG0714 MoxR-like ATPases.
 
     0.869
ISM_09065
COG3816 Uncharacterized protein conserved in bacteria.
 
     0.801
ISM_08625
Hypothetical protein.
  
    0.774
ISM_04575
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
 
 
 0.761
ISM_01950
Hypothetical protein; COG2124 Cytochrome P450.
   
 0.728
ISM_16970
COG2124 Cytochrome P450.
   
 0.728
ISM_05295
Sterol desaturase-like protein; COG3000 Sterol desaturase.
   
 0.701
ISM_11650
Hypothetical protein; COG3000 Sterol desaturase.
   
 0.701
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.