STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09170Alpha-1,2-fucosyltransferase, putative. (291 aa)    
Predicted Functional Partners:
ISM_09175
Glycosyl transferase, family 25; COG3306 Glycosyltransferase involved in LPS biosynthesis.
 
     0.929
ISM_11060
Hypothetical protein.
 
     0.796
ISM_09180
COG1012 NAD-dependent aldehyde dehydrogenases.
       0.773
ISM_14520
Methyltransferase, FkbM family protein; COG0500 SAM-dependent methyltransferases.
 
     0.647
ISM_13515
Lipopolysaccharide core biosynthesis mannosyltransferase; COG0438 Glycosyltransferase.
 
     0.522
ISM_09185
Thiol-specific antioxidant protein; COG0450 Peroxiredoxin.
       0.515
ISM_09165
COG0515 Serine/threonine protein kinase.
       0.512
gmd
NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
   
 0.465
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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