Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ISM_09175Glycosyl transferase, family 25; COG3306 Glycosyltransferase involved in LPS biosynthesis. (250 aa)    
Predicted Functional Partners:
ISM_09170
Alpha-1,2-fucosyltransferase, putative.
 
     0.926
ISM_09180
COG1012 NAD-dependent aldehyde dehydrogenases.
       0.773
ISM_13515
Lipopolysaccharide core biosynthesis mannosyltransferase; COG0438 Glycosyltransferase.
 
   
 0.620
ISM_11060
Hypothetical protein.
 
     0.610
ISM_15560
Hypothetical protein.
  
     0.583
ISM_09185
Thiol-specific antioxidant protein; COG0450 Peroxiredoxin.
       0.517
ISM_09165
COG0515 Serine/threonine protein kinase.
       0.512
ISM_11365
COG1414 Transcriptional regulator.
  
     0.424
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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