Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09225COG3203 Outer membrane protein (porin). (379 aa)    
Predicted Functional Partners:
ISM_08985
VacJ lipoprotein, putative; COG2853 Surface lipoprotein.
   
 
 0.753
ISM_12205
Hypothetical protein; COG0400 Predicted esterase.
  
     0.630
ISM_09115
Hypothetical protein; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.
  
   
 0.603
ISM_08980
Toluene tolerance family protein; COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
    
 
 0.562
ISM_09205
Hypothetical protein.
 
     0.538
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.519
ISM_02670
Hypothetical protein.
   
 
 0.513
ISM_13275
COG3203 Outer membrane protein (porin).
   
 
 0.513
ISM_00320
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
   0.467
ISM_01380
Protease precursor DegQ; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
   0.467
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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