STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09366Possible peptidoglycan binding protein; COG1652 Uncharacterized protein containing LysM domain. (392 aa)    
Predicted Functional Partners:
ISM_09361
Hypothetical protein; COG1611 Predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family.
    
  0.767
ISM_14400
Hypothetical protein; COG1154 Deoxyxylulose-5-phosphate synthase.
  
 
   0.709
ISM_09371
ABC transporter, ATP-binding/permease protein; COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.
       0.654
ISM_15855
Hypothetical protein.
    
   0.632
ISM_04760
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
    0.599
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.574
ISM_00630
Hypothetical protein.
    
   0.505
ISM_00635
Type I secretion target repeat protein.
    
   0.505
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
    
   0.505
ISM_01770
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
    
   0.505
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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