STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09376CAAX amino terminal protease family protein; COG1266 Predicted metal-dependent membrane protease. (537 aa)    
Predicted Functional Partners:
ISM_09371
ABC transporter, ATP-binding/permease protein; COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.
       0.558
ISM_16695
Chain length determinant protein, putative; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
     0.554
ISM_16690
Exopolysaccharide biosynthesis domain protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).
 
     0.528
ISM_09631
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.526
ISM_02945
COG0842 ABC-type multidrug transport system, permease component.
   
  
 0.499
ISM_11585
COG0842 ABC-type multidrug transport system, permease component.
   
  
 0.499
ISM_02950
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.444
ISM_16720
Hypothetical protein.
  
   
 0.407
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.