STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09396Hypothetical protein; COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase. (206 aa)    
Predicted Functional Partners:
ISM_09401
PQQ enzyme repeat family protein; COG1520 FOG: WD40-like repeat.
 
     0.819
ISM_05920
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.769
ISM_14590
Hypothetical protein.
  
     0.740
ISM_02760
Membrane protein, putative.
  
     0.736
ISM_09971
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.731
ISM_16045
Hypothetical protein.
  
     0.718
ISM_09806
Hypothetical protein.
  
     0.703
ISM_09601
Hypothetical protein.
  
     0.700
ISM_01180
Hypothetical protein.
  
     0.699
ISM_13495
C4-dicarboxylate transport sensor protein DctB, putative; COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
  
     0.684
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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