STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09456Oligopeptide/dipeptide uptake family ABC transporter, permease protein; COG4174 ABC-type uncharacterized transport system, permease component. (362 aa)    
Predicted Functional Partners:
ISM_09461
Oligopeptide/dipeptide uptake family ABC transporter, permease protein; COG4239 ABC-type uncharacterized transport system, permease component.
  
 0.985
ISM_09466
Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein; COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily.
 
 0.982
ISM_09451
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
  
 0.966
ISM_15680
ABC transporter, periplasmic substrate-binding protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
  
 0.856
ISM_03355
ABC transporter permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.741
ISM_01330
Probable dipeptide ABC transporter, permease protein (DppC); COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.711
ISM_03350
ABC transporter ATP-binding protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
     0.671
ISM_00225
Putative ABC transporter ATP-binding protein; COG4172 ABC-type uncharacterized transport system, duplicated ATPase component.
 
     0.657
ISM_00240
Peptide/nickel/opine uptake family ABC transporter, permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.656
ISM_11390
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.571
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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