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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09486COG2200 FOG: EAL domain. (257 aa)    
Predicted Functional Partners:
ISM_00215
Hypothetical protein; COG2199 FOG: GGDEF domain.
 0.996
ISM_12050
Diguanylate cyclase, putative; COG2199 FOG: GGDEF domain.
 
 0.991
ISM_12405
GGDEF; COG2199 FOG: GGDEF domain.
 
 0.985
ISM_11995
Diguanylate cyclase, putative/response regulator; COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 
 0.963
ISM_05685
Hypothetical protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
0.897
ISM_05265
Diguanylate cyclase, putative; COG2200 FOG: EAL domain.
 
 
 0.882
ISM_06625
Response regulator; COG0784 FOG: CheY-like receiver.
 
 0.871
ISM_06925
Sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
 
 0.847
ISM_11350
COG1536 Flagellar motor switch protein.
  
  
 0.716
ISM_03770
Hypothetical protein; COG2198 FOG: HPt domain.
    
 0.693
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.