Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ISM_09531Hydrolase, alpha/beta fold family protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (257 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
 
 0.722
ISM_09536
Hypothetical protein.
       0.696
ISM_16195
COG0236 Acyl carrier protein.
 
 
 0.680
ISM_02040
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
ISM_04100
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
ISM_04670
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
ISM_09776
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
ISM_10885
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
ISM_11165
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
ISM_13860
COG1960 Acyl-CoA dehydrogenases.
    
  0.559
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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