STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09556COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
ISM_01560
Hypothetical protein.
 
    0.939
ISM_08810
Hypothetical protein.
  
    0.844
ISM_16055
Twin-arginine translocation pathway signal sequence domain protein, putative.
  
    0.822
ISM_02080
COG1764 Predicted redox protein, regulator of disulfide bond formation.
  
  
 0.641
ISM_14215
COG3871 Uncharacterized stress protein (general stress protein 26).
  
    0.622
ISM_07385
COG3524 Capsule polysaccharide export protein.
   
    0.532
ISM_04700
Putative function in exopolysaccharide production; COG1596 Periplasmic protein involved in polysaccharide export.
   
    0.515
ISM_13040
COG1596 Periplasmic protein involved in polysaccharide export.
   
    0.515
ISM_07390
Putative cell surface polysaccharide export ABC-2 transporter permease protein; wzm1Y20833; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
    0.513
ISM_01555
Hypothetical protein.
 
  
 0.496
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.