STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09556COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
ISM_01560
Hypothetical protein.
 
  
 0.931
ISM_14215
COG3871 Uncharacterized stress protein (general stress protein 26).
  
    0.838
ISM_08810
Hypothetical protein.
  
    0.815
ISM_16055
Twin-arginine translocation pathway signal sequence domain protein, putative.
  
    0.773
ISM_02080
COG1764 Predicted redox protein, regulator of disulfide bond formation.
  
  
 0.577
ISM_06190
Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase.
  
  
 0.523
ISM_07385
COG3524 Capsule polysaccharide export protein.
   
    0.510
ISM_04700
Putative function in exopolysaccharide production; COG1596 Periplasmic protein involved in polysaccharide export.
   
    0.495
ISM_13040
COG1596 Periplasmic protein involved in polysaccharide export.
   
    0.495
ISM_01555
Hypothetical protein.
 
  
 0.490
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.