STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09641Hypothetical protein; COG3591 V8-like Glu-specific endopeptidase; Belongs to the peptidase S1B family. (273 aa)    
Predicted Functional Partners:
ISM_09646
Trypsin domain protein; COG5640 Secreted trypsin-like serine protease.
 
    
0.814
ISM_00425
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
  
    0.579
ISM_09636
COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
       0.578
ISM_09651
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.501
ISM_06285
COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
   
    0.499
ISM_07920
COG1846 Transcriptional regulators.
  
     0.461
ISM_15780
Hypothetical protein.
  
     0.461
ISM_11080
Hypothetical protein.
  
    0.459
ISM_09656
COG4583 Sarcosine oxidase gamma subunit.
       0.443
ISM_09661
Sarcosine oxidase, alpha subunit family protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
       0.443
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.