STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09661Sarcosine oxidase, alpha subunit family protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family. (981 aa)    
Predicted Functional Partners:
ISM_09666
COG4311 Sarcosine oxidase delta subunit.
 
 0.999
ISM_09671
Sarcosine oxidase, beta subunit family protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
 0.999
ISM_09656
COG4583 Sarcosine oxidase gamma subunit.
 
 0.998
ISM_12980
Sarcosine oxidase, beta subunit family protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
 0.997
ISM_09341
COG4311 Sarcosine oxidase delta subunit.
 
 0.996
ISM_12985
COG4311 Sarcosine oxidase delta subunit.
 
 0.996
ISM_12995
COG4583 Sarcosine oxidase gamma subunit.
 
 0.996
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
 
 0.995
ISM_09351
COG4583 Sarcosine oxidase gamma subunit.
 
 0.987
ISM_09331
Sarcosine oxidase, beta subunit family protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
 0.986
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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