STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISM_09681GDSL-like lipase/acylhydrolase, putative; COG2755 Lysophospholipase L1 and related esterases. (226 aa)    
Predicted Functional Partners:
ISM_06050
Hypothetical protein.
  
 0.927
ISM_13355
Hypothetical protein.
  
 0.927
ISM_05160
Hypothetical protein.
  
 0.764
ISM_12825
Hypothetical protein.
  
 0.764
ISM_00480
Hypothetical protein; COG5434 Endopolygalacturonase.
 
 
 0.759
ISM_02485
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
 
  0.717
ISM_09566
Hypothetical protein.
  
 
  0.671
ISM_00705
Putative RTX family exoprotein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
  0.670
ISM_09571
Hypothetical protein.
  
 
  0.668
ISM_00630
Hypothetical protein.
    
  0.622
Your Current Organism:
Roseovarius nubinhibens
NCBI taxonomy Id: 89187
Other names: R. nubinhibens ISM, Roseobacter sp. ISM, Roseovarius nubinhibens ISM, Roseovarius nubinhibens str. ISM, Roseovarius nubinhibens strain ISM, marine bacterium ISM
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